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Changes in bulk soil affect the disease-suppressive rhizosphere microbiome against Fusarium wilt disease

Lin FU, Wu XIONG, Francisco DINI-ANDREOTE, Beibei WANG, Chengyuan TAO, Yunze RUAN, Zongzhuan SHEN, Rong LI, Qirong SHEN

Frontiers of Agricultural Science and Engineering 2020, Volume 7, Issue 3,   Pages 307-316 doi: 10.15302/J-FASE-2020328

Abstract: However, relatively little information is available about the relationship between bulk and rhizosphere soilHere, the assembly of banana bulk soil and rhizosphere microbiomes was investigated in a monocultureThe soil microbiota was further characterized by MiSeq sequencing and quantitative PCR.results indicate that disease suppression was mediated by the structure of a suppressive rhizosphere microbiomeOverall microbiome suppressiveness was primarily related to a particular set of enriched bacterial taxa

Keywords： agricultural practice     bulk soil     disease suppression     rhizosphere ecology    

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OPPORTUNITIES AND APPROACHES FOR MANIPULATING SOIL-PLANT MICROBIOMES FOR EFFECTIVE CROP NITROGEN USE

Frontiers of Agricultural Science and Engineering 2022, Volume 9, Issue 3,   Pages 333-343 doi: 10.15302/J-FASE-2022450

Abstract:

● Matching nitrification inhibitors with soil properties and nitrifiers

Keywords： nitrogen     microbiome     NUE     rhizosphere     phyllosphere     soil food web    

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Integrated analysis of gut microbiome and host immune responses in COVID-19

Frontiers of Medicine 2022, Volume 16, Issue 2,   Pages 263-275 doi: 10.1007/s11684-022-0921-6

Abstract: Emerging evidence indicates that the gut microbiome contributes to the host immune response to infectiousHere, to explore the role of the gut microbiome in the host immune responses in COVID-19, we conductedWe found that the diversity of the gut microbiome was reduced in severe/critical COVID-19 cases comparedIn addition, an integrative analysis of gut microbiome and the transcriptome of peripheral blood mononuclear

Keywords： COVID-19     SARS-COV-2     gut microbiome     immune response    

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Microbiome subsets determine tumor prognosis and molecular characteristics of clear-cell renal cell carcinoma: a multi-center integrated analysis of microbiome, metabolome, and transcriptome data

Frontiers of Medicine doi: 10.1007/s11684-023-1029-3

Abstract: Microbiome subsets determine tumor prognosis and molecular characteristics of clear-cell renal cell carcinoma: a multi-center integrated analysis of microbiome, metabolome, and transcriptome data

Keywords： tumor prognosis molecular     Microbiome subsets determine     center analysis microbiome     transcriptome data    

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Understanding building-occupant-microbiome interactions toward healthy built environments: A review

Shuai Li, Zhiyao Yang, Da Hu, Liu Cao, Qiang He

Frontiers of Environmental Science & Engineering 2021, Volume 15, Issue 4, doi: 10.1007/s11783-020-1357-3

Abstract: Abstract • The built environment, occupants, and microbiomes constitute an integrated ecosystem. • This review summarizes research progress which has focused primarily on microbiomes. • Critical research needs include studying impacts of occupant behaviors on microbiomes. Built environments, occupants, and microbiomes constitute a system of ecosystems with extensive interactions that impact one another. Understanding the interactions between these systems is essential to develop strategies for effective management of the built environment and its inhabitants to enhance public health and well-being. Numerous studies have been conducted to characterize the microbiomes of the built environment. This review summarizes current progress in understanding the interactions between attributes of built environments and occupant behaviors that shape the structure and dynamics of indoor microbial communities. In addition, this review also discusses the challenges and future research needs in the field of microbiomes of the built environment that necessitate research beyond the basic characterization of microbiomes in order to gain an understanding of the causal mechanisms between the built environment, occupants, and microbiomes, which will provide a knowledge base for the development of transformative intervention strategies toward healthy built environments. The pressing need to control the transmission of SARS-CoV-2 in indoor environments highlights the urgency and significance of understanding the complex interactions between the built environment, occupants, and microbiomes, which is the focus of this review.

Keywords： Microbiome     Built Environment     Occupant     Health    

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Meter-scale variation within a single transect demands attention to taxon accumulation curves in riverine microbiome

Frontiers of Environmental Science & Engineering 2022, Volume 16, Issue 5, doi: 10.1007/s11783-022-1543-6

Abstract:

● Riverine microbiomes exhibited hyperlocal variation within a single transect.

Keywords： Microbiome     Freshwater     Taxon accumulation curve     Community assembly    

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Human microbiome and prostate cancer development: current insights into the prevention and treatment

Solmaz Ohadian Moghadam, Seyed Ali Momeni

Frontiers of Medicine 2021, Volume 15, Issue 1,   Pages 11-32 doi: 10.1007/s11684-019-0731-7

Abstract: The human microbiome may influence prostate cancer development.several studies have focused on the effect of prostate infections as well as the composition of the human microbiomeIn healthy individuals, the microbiome plays a crucial role in the maintenance of homeostasis of bodyFurthermore, we discuss strategies to target the microbiome for risk assessment, prevention, and treatment

Keywords： microbiome     prostate cancer     prevention     treatment     molecular pathological epidemiology (MPE)     biomarker    

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Rhizosphere immunity: targeting the underground for sustainable plant health management

Zhong WEI, Ville-Petri FRIMAN, Thomas POMMIER, Stefan GEISEN, Alexandre JOUSSET, Qirong SHEN

Frontiers of Agricultural Science and Engineering 2020, Volume 7, Issue 3,   Pages 317-328 doi: 10.15302/J-FASE-2020346

Abstract: level property emerging from networks of interactions between plants, microbiota and the surrounding soildeveloping multidisciplinary pathogen management strategies that focus on steering the whole plant-microbe-soilThis might be achieved by bringing together the latest discoveries in phytopathology, microbiome research, soil science and agronomy to pave the way toward more sustainable and productive agriculture.

Keywords： rhizosphere     soil microbiome     plant immunity     microbial ecology     plant health     soilborne pathogens    

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Meter-scale variation within a single transect demands attention to taxon accumulation curves in riverine microbiome

Frontiers of Environmental Science & Engineering 2022, Volume 16, Issue 6, doi: 10.1007/s11783-022-1560-5

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Comparative analysis of impact of human occupancy on indoor microbiomes

Frontiers of Environmental Science & Engineering 2021, Volume 15, Issue 5, doi: 10.1007/s11783-020-1383-1

Abstract:

• Exposure to indoor microbiomes is a public health concern in educational facilities.

Keywords： Built environment     Indoor microbiome     Occupant     Building     Sequencing    

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Antibiotics-mediated intestinal microbiome perturbation aggravates tacrolimus-induced glucose disorders

Yuqiu Han, Xiangyang Jiang, Qi Ling, Li Wu, Pin Wu, Ruiqi Tang, Xiaowei Xu, Meifang Yang, Lijiang Zhang, Weiwei Zhu, Baohong Wang, Lanjuan Li

Frontiers of Medicine 2019, Volume 13, Issue 4,   Pages 471-481 doi: 10.1007/s11684-019-0686-8

Abstract: The altered components of gut microbiome and predicted microbial functional profiles showed significantIn conclusion, ABX aggravated the effect of TAC on the microbiome and its metabolic capacities, whichThese findings suggest that the ABX-altered microbiome can amplify the diabetogenic effect of TAC and

Keywords： antibiotics     tacrolimus     glucose disorders     microbiome    

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Emerging Trends for Microbiome Analysis: From Single-Cell Functional Imaging to Microbiome Big Data

Jian Xu, Bo Ma, Xiaoquan Su, Shi Huang, Xin Xu, Xuedong Zhou, Wei Huang, Rob Knight

Engineering 2017, Volume 3, Issue 1,   Pages 66-70 doi: 10.1016/J.ENG.2017.01.020

Abstract:

Method development has always been and will continue to be a core driving force of microbiome scienceIn this perspective, we argue that in the next decade, method development in microbiome analysis willdata analysis to microbiome data science.Some of the recent method-development efforts by Chinese microbiome scientists and their internationalIt is our belief that the China Microbiome Initiative has the opportunity to deliver outstanding &ldquo

Keywords： Microbiome     Methoddevelopment     Single-cell analysis     Big data     China Microbiome Initiative    

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Coupling of the chemical niche and microbiome in the rhizosphere: implications from watermelon grafting

Yang SONG, Chen ZHU, Waseem RAZA, Dongsheng WANG, Qiwei HUANG, Shiwei GUO, Ning LING, Qirong SHEN

Frontiers of Agricultural Science and Engineering 2019, Volume 6, Issue 2,   Pages 206-206 doi: 10.15302/J-FASE-2018234

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Intestinal Epithelial Axin1 Deficiency Protects Against Colitis via Altered Gut Microbiota

Shari Garrett,Yongguo Zhang,Yinglin Xia,Jun Sun,

Engineering doi: 10.1016/j.eng.2023.06.007

Abstract: These data suggest non-colitogenic effects driven by the gut microbiome.Further mechanistic studies using specific Axin1 mutations elucidating how Axin1 modulates the microbiome

Keywords： Axin1     Bacteria     Microbiome inflammation     Inflammatory bowel disease     Immunity     Microbiome     Paneth cells     Akkermansia    

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Assessment of glass fiber-reinforced polyester pipe powder in soil improvement

Frontiers of Structural and Civil Engineering 2021, Volume 15, Issue 3,   Pages 742-753 doi: 10.1007/s11709-021-0732-x

Abstract: Then, using the optimum PP addition, the bearing capacity of the soil was estimated through a seriesThe bearing capacity of sandy soil was improved by up to 30.7%.The ratio of the depth of the PP-reinforced soil to the diameter of the foundation model (H/D) of 1.25 could sufficiently strengthen sandy soil when the optimum PP ratio was used.capacity can be attributed to the chopped fibers in the PP and their multiaxial distribution in the soil

Keywords： shallow foundation     sandy soil     bearing capacity     soil improvement     pipe powder    

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Title Author Date Type Operation

Changes in bulk soil affect the disease-suppressive rhizosphere microbiome against Fusarium wilt disease

Lin FU, Wu XIONG, Francisco DINI-ANDREOTE, Beibei WANG, Chengyuan TAO, Yunze RUAN, Zongzhuan SHEN, Rong LI, Qirong SHEN

Journal Article

OPPORTUNITIES AND APPROACHES FOR MANIPULATING SOIL-PLANT MICROBIOMES FOR EFFECTIVE CROP NITROGEN USE

Journal Article

Integrated analysis of gut microbiome and host immune responses in COVID-19

Journal Article

Microbiome subsets determine tumor prognosis and molecular characteristics of clear-cell renal cell carcinoma: a multi-center integrated analysis of microbiome, metabolome, and transcriptome data

Journal Article

Understanding building-occupant-microbiome interactions toward healthy built environments: A review

Shuai Li, Zhiyao Yang, Da Hu, Liu Cao, Qiang He

Journal Article

Meter-scale variation within a single transect demands attention to taxon accumulation curves in riverine microbiome

Journal Article

Human microbiome and prostate cancer development: current insights into the prevention and treatment

Solmaz Ohadian Moghadam, Seyed Ali Momeni

Journal Article

Rhizosphere immunity: targeting the underground for sustainable plant health management

Zhong WEI, Ville-Petri FRIMAN, Thomas POMMIER, Stefan GEISEN, Alexandre JOUSSET, Qirong SHEN

Journal Article

Meter-scale variation within a single transect demands attention to taxon accumulation curves in riverine microbiome

Journal Article

Comparative analysis of impact of human occupancy on indoor microbiomes

Journal Article

Antibiotics-mediated intestinal microbiome perturbation aggravates tacrolimus-induced glucose disorders

Yuqiu Han, Xiangyang Jiang, Qi Ling, Li Wu, Pin Wu, Ruiqi Tang, Xiaowei Xu, Meifang Yang, Lijiang Zhang, Weiwei Zhu, Baohong Wang, Lanjuan Li

Journal Article

Emerging Trends for Microbiome Analysis: From Single-Cell Functional Imaging to Microbiome Big Data

Jian Xu, Bo Ma, Xiaoquan Su, Shi Huang, Xin Xu, Xuedong Zhou, Wei Huang, Rob Knight

Journal Article

Coupling of the chemical niche and microbiome in the rhizosphere: implications from watermelon grafting

Yang SONG, Chen ZHU, Waseem RAZA, Dongsheng WANG, Qiwei HUANG, Shiwei GUO, Ning LING, Qirong SHEN

Journal Article

Intestinal Epithelial Axin1 Deficiency Protects Against Colitis via Altered Gut Microbiota

Shari Garrett,Yongguo Zhang,Yinglin Xia,Jun Sun,

Journal Article

Assessment of glass fiber-reinforced polyester pipe powder in soil improvement

Journal Article